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conda
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pip (default)
spack
Argonne Leadership Computing Facility (ALCF)
National Energy Research Scientific Computing (NERSC)
Oak Ridge Leadership Computing Facility (OLCF)
Tutorials
Colab
1. DeepHyper 101
2. Hyperparameter search for classification with Tabular data (Keras)
3. Multi-Fidelity Hyperparameter Optimization with Keras
4. Hyperparameter Search to reduce overfitting in Machine Learning (Scikit-Learn)
5. Automated Machine Learning with Scikit-Learn
6. Neural Architecture Search (Basic)
7. Multi-Objective Optimization - 101
Notebooks
1. Hyperparameter search for text classification (Pytorch)
2. Neural Architecture Search with Multiple Input Tensors
3. From Neural Architecture Search to Automated Deep Ensemble with Uncertainty Quantification
Scripts
1. Tuning of MPI Programs
2. Introduction to Distributed Bayesian Optimization (DBO) with MPI (Communication) and Redis (Storage)
3. Understanding the pros and cons of Evaluator parallel backends
Argonne LCF
1. Execution on the Theta supercomputer
2. Execution on the ThetaGPU supercomputer (with Ray)
3. Execution on the ThetaGPU supercomputer (with MPI)
4. Execution on the ThetaGPU supercomputer (within a Jupyter notebook)
Examples
Standard Experimental Design (Grid Search)
Notify Failures in Hyperparameter optimization
Transfer Learning for Hyperparameter Search
From Serial to Parallel Evaluations
Profile the Worker Utilization
F.A.Q.
Blog (Events & Workshops)
Publications
Authors
API Reference
Analysis
deephyper.analysis.figure_size
deephyper.analysis.rank
deephyper.analysis.update_matplotlib_rc
deephyper.analysis.hps
deephyper.analysis.hps.filter_failed_objectives
deephyper.analysis.hps.parameters_at_max
deephyper.analysis.hps.plot_search_trajectory_single_objective_hps
deephyper.analysis.hps.plot_worker_utilization
deephyper.analysis.hps.read_results_from_csv
Core
deephyper.core.analytics
deephyper.core.analytics.DBManager
deephyper.core.analytics.dashboard
deephyper.core.cli
deephyper.core.exceptions
deephyper.core.exceptions.DeephyperError
deephyper.core.exceptions.DeephyperRuntimeError
deephyper.core.exceptions.MaximumJobsSpawnReached
deephyper.core.exceptions.MissingRequirementError
deephyper.core.exceptions.RunFunctionError
deephyper.core.exceptions.SearchTerminationError
deephyper.core.exceptions.loading
deephyper.core.exceptions.loading.DeephyperError
deephyper.core.exceptions.loading.GenericLoaderError
deephyper.core.exceptions.nas
deephyper.core.exceptions.nas.DeephyperError
deephyper.core.exceptions.nas.NASError
deephyper.core.exceptions.nas.space
deephyper.core.exceptions.problem
deephyper.core.exceptions.problem.DeephyperError
deephyper.core.exceptions.problem.NaProblemError
deephyper.core.exceptions.problem.ProblemLoadDataIsNotCallable
deephyper.core.exceptions.problem.ProblemPreprocessingIsNotCallable
deephyper.core.exceptions.problem.SearchSpaceBuilderIsNotCallable
deephyper.core.exceptions.problem.SearchSpaceBuilderMissingDefaultParameter
deephyper.core.exceptions.problem.SearchSpaceBuilderMissingParameter
deephyper.core.exceptions.problem.SpaceDimNameOfWrongType
deephyper.core.exceptions.problem.WrongProblemObjective
deephyper.core.parser
deephyper.core.parser.add_arguments_from_signature
deephyper.core.parser.signature
deephyper.core.parser.str2bool
deephyper.core.utils
deephyper.core.utils.load_attr
deephyper.core.utils.terminate_on_timeout
deephyper.core.utils.joblib_utils
deephyper.core.utils.joblib_utils.parse_version
Ensemble
deephyper.ensemble.BaggingEnsembleClassifier
deephyper.ensemble.BaggingEnsembleRegressor
deephyper.ensemble.BaseEnsemble
deephyper.ensemble.UQBaggingEnsembleClassifier
deephyper.ensemble.UQBaggingEnsembleRegressor
Evaluator
deephyper.evaluator.distributed
deephyper.evaluator.parse_subprocess_result
deephyper.evaluator.profile
deephyper.evaluator.queued
deephyper.evaluator.to_json
deephyper.evaluator.Evaluator
deephyper.evaluator.Job
deephyper.evaluator.MPICommEvaluator
deephyper.evaluator.ProcessPoolEvaluator
deephyper.evaluator.RayEvaluator
deephyper.evaluator.RunningJob
deephyper.evaluator.SerialEvaluator
deephyper.evaluator.ThreadPoolEvaluator
deephyper.evaluator.callback
deephyper.evaluator.callback.Callback
deephyper.evaluator.callback.LoggerCallback
deephyper.evaluator.callback.ProfilingCallback
deephyper.evaluator.callback.SearchEarlyStopping
deephyper.evaluator.callback.TqdmCallback
deephyper.evaluator.storage
deephyper.evaluator.storage.MemoryStorage
deephyper.evaluator.storage.RayStorage
deephyper.evaluator.storage.RedisStorage
deephyper.evaluator.storage.Storage
Keras
deephyper.keras.callbacks
deephyper.keras.callbacks.import_callback
deephyper.keras.callbacks.CSVExtendedLogger
deephyper.keras.callbacks.LearningRateScheduleCallback
deephyper.keras.callbacks.LearningRateWarmupCallback
deephyper.keras.callbacks.StopIfUnfeasible
deephyper.keras.callbacks.TimeStopping
deephyper.keras.callbacks.csv_extended_logger
deephyper.keras.callbacks.csv_extended_logger.CSVExtendedLogger
deephyper.keras.callbacks.learning_rate_warmup
deephyper.keras.callbacks.learning_rate_warmup.LearningRateScheduleCallback
deephyper.keras.callbacks.learning_rate_warmup.LearningRateWarmupCallback
deephyper.keras.callbacks.stop_if_unfeasible
deephyper.keras.callbacks.stop_if_unfeasible.StopIfUnfeasible
deephyper.keras.callbacks.stop_on_timeout
deephyper.keras.callbacks.stop_on_timeout.TerminateOnTimeOut
deephyper.keras.callbacks.stop_on_timeout.datetime
deephyper.keras.callbacks.time_stopping
deephyper.keras.callbacks.time_stopping.TimeStopping
deephyper.keras.callbacks.utils
deephyper.keras.callbacks.utils.import_callback
deephyper.keras.layers
deephyper.keras.layers.AttentionCOS
deephyper.keras.layers.AttentionConst
deephyper.keras.layers.AttentionGAT
deephyper.keras.layers.AttentionGCN
deephyper.keras.layers.AttentionGenLinear
deephyper.keras.layers.AttentionLinear
deephyper.keras.layers.AttentionSymGAT
deephyper.keras.layers.GlobalAttentionPool
deephyper.keras.layers.GlobalAttentionSumPool
deephyper.keras.layers.GlobalAvgPool
deephyper.keras.layers.GlobalMaxPool
deephyper.keras.layers.GlobalSumPool
deephyper.keras.layers.MessagePasserNNM
deephyper.keras.layers.MessagePassing
deephyper.keras.layers.Padding
deephyper.keras.layers.SparseMPNN
deephyper.keras.layers.UpdateFuncGRU
deephyper.keras.layers.UpdateFuncMLP
deephyper.keras.utils
NAS
deephyper.nas.KSearchSpace
deephyper.nas.NxSearchSpace
deephyper.nas.losses
deephyper.nas.losses.load_attr
deephyper.nas.losses.selectLoss
deephyper.nas.losses.tfp_negloglik
deephyper.nas.losses.OrderedDict
deephyper.nas.lr_scheduler
deephyper.nas.lr_scheduler.exponential_decay
deephyper.nas.metrics
deephyper.nas.metrics.acc
deephyper.nas.metrics.load_attr
deephyper.nas.metrics.mae
deephyper.nas.metrics.mse
deephyper.nas.metrics.r2
deephyper.nas.metrics.rmse
deephyper.nas.metrics.selectMetric
deephyper.nas.metrics.sparse_perplexity
deephyper.nas.metrics.tfp_mae
deephyper.nas.metrics.tfp_mse
deephyper.nas.metrics.tfp_r2
deephyper.nas.metrics.tfp_rmse
deephyper.nas.metrics.to_tfp
deephyper.nas.metrics.OrderedDict
deephyper.nas.node
deephyper.nas.node.ConstantNode
deephyper.nas.node.MimeNode
deephyper.nas.node.MirrorNode
deephyper.nas.node.Node
deephyper.nas.node.Operation
deephyper.nas.node.OperationNode
deephyper.nas.node.VariableNode
deephyper.nas.operation
deephyper.nas.operation.operation
deephyper.nas.operation.AddByPadding
deephyper.nas.operation.AddByProjecting
deephyper.nas.operation.Concatenate
deephyper.nas.operation.Connect
deephyper.nas.operation.Identity
deephyper.nas.operation.Operation
deephyper.nas.operation.Tensor
deephyper.nas.operation.Zero
deephyper.nas.preprocessing
deephyper.nas.preprocessing.minmaxstdscaler
deephyper.nas.preprocessing.stdscaler
deephyper.nas.run
deephyper.nas.run.run_base_trainer
deephyper.nas.run.run_debug
deephyper.nas.run.run_debug_arch
deephyper.nas.run.run_debug_hp_arch
deephyper.nas.run.run_debug_slow
deephyper.nas.run.run_distributed_base_trainer
deephyper.nas.run.run_horovod
deephyper.nas.spacelib
deephyper.nas.spacelib.tabular
deephyper.nas.spacelib.tabular.DenseSkipCoSpace
deephyper.nas.spacelib.tabular.FeedForwardSpace
deephyper.nas.spacelib.tabular.OneLayerSpace
deephyper.nas.spacelib.tabular.SupervisedRegAutoEncoderSpace
deephyper.nas.spacelib.tabular.dense_skipco
deephyper.nas.spacelib.tabular.feed_forward
deephyper.nas.spacelib.tabular.one_layer
deephyper.nas.spacelib.tabular.supervised_reg_auto_encoder
deephyper.nas.trainer
deephyper.nas.trainer.BaseTrainer
deephyper.nas.trainer.HorovodTrainer
Problem
deephyper.problem.HpProblem
deephyper.problem.NaProblem
Search
deephyper.search.Search
deephyper.search.hps
deephyper.search.hps.AMBS
deephyper.search.hps.CBO
deephyper.search.hps.ExperimentalDesignSearch
deephyper.search.hps.MPIDistributedBO
deephyper.search.nas
deephyper.search.nas.AMBSMixed
deephyper.search.nas.AgEBO
deephyper.search.nas.NeuralArchitectureSearch
deephyper.search.nas.Random
deephyper.search.nas.RegularizedEvolution
deephyper.search.nas.RegularizedEvolutionMixed
Skopt
deephyper.skopt.dummy_minimize
deephyper.skopt.dump
deephyper.skopt.expected_minimum
deephyper.skopt.forest_minimize
deephyper.skopt.gbrt_minimize
deephyper.skopt.gp_minimize
deephyper.skopt.load
deephyper.skopt.BayesSearchCV
deephyper.skopt.Optimizer
deephyper.skopt.Space
deephyper.skopt.acquisition
deephyper.skopt.acquisition.gaussian_acquisition_1D
deephyper.skopt.acquisition.gaussian_ei
deephyper.skopt.acquisition.gaussian_lcb
deephyper.skopt.acquisition.gaussian_mes
deephyper.skopt.acquisition.gaussian_pi
deephyper.skopt.benchmarks
deephyper.skopt.benchmarks.bench1
deephyper.skopt.benchmarks.bench1_with_time
deephyper.skopt.benchmarks.bench2
deephyper.skopt.benchmarks.bench3
deephyper.skopt.benchmarks.bench4
deephyper.skopt.benchmarks.bench5
deephyper.skopt.benchmarks.branin
deephyper.skopt.benchmarks.hart6
deephyper.skopt.callbacks
deephyper.skopt.callbacks.check_callback
deephyper.skopt.callbacks.dump
deephyper.skopt.callbacks.time
deephyper.skopt.callbacks.Callable
deephyper.skopt.callbacks.CheckpointSaver
deephyper.skopt.callbacks.DeadlineStopper
deephyper.skopt.callbacks.DeltaXStopper
deephyper.skopt.callbacks.DeltaYStopper
deephyper.skopt.callbacks.EarlyStopper
deephyper.skopt.callbacks.HollowIterationsStopper
deephyper.skopt.callbacks.ThresholdStopper
deephyper.skopt.callbacks.TimerCallback
deephyper.skopt.callbacks.VerboseCallback
deephyper.skopt.learning
deephyper.skopt.learning.ExtraTreesRegressor
deephyper.skopt.learning.GradientBoostingQuantileRegressor
deephyper.skopt.learning.RandomForestRegressor
deephyper.skopt.learning.forest
deephyper.skopt.learning.forest.ExtraTreesRegressor
deephyper.skopt.learning.forest.RandomForestRegressor
deephyper.skopt.learning.gbrt
deephyper.skopt.learning.gbrt.GradientBoostingQuantileRegressor
deephyper.skopt.moo
deephyper.skopt.moo.hypervolume
deephyper.skopt.moo.is_pareto_efficient
deephyper.skopt.moo.non_dominated_set
deephyper.skopt.moo.non_dominated_set_ranked
deephyper.skopt.moo.pareto_front
deephyper.skopt.moo.MoAugmentedChebyshevFunction
deephyper.skopt.moo.MoChebyshevFunction
deephyper.skopt.moo.MoLinearFunction
deephyper.skopt.moo.MoPBIFunction
deephyper.skopt.moo.MoQuadraticFunction
deephyper.skopt.moo.MoScalarFunction
deephyper.skopt.optimizer
deephyper.skopt.optimizer.base_minimize
deephyper.skopt.optimizer.dummy_minimize
deephyper.skopt.optimizer.forest_minimize
deephyper.skopt.optimizer.gbrt_minimize
deephyper.skopt.optimizer.gp_minimize
deephyper.skopt.optimizer.Optimizer
deephyper.skopt.optimizer.base
deephyper.skopt.optimizer.base.base_minimize
deephyper.skopt.optimizer.base.check_callback
deephyper.skopt.optimizer.base.eval_callbacks
deephyper.skopt.optimizer.base.Iterable
deephyper.skopt.optimizer.base.Optimizer
deephyper.skopt.optimizer.base.VerboseCallback
deephyper.skopt.optimizer.dummy
deephyper.skopt.optimizer.dummy.base_minimize
deephyper.skopt.optimizer.dummy.dummy_minimize
deephyper.skopt.optimizer.forest
deephyper.skopt.optimizer.forest.base_minimize
deephyper.skopt.optimizer.forest.forest_minimize
deephyper.skopt.optimizer.gbrt
deephyper.skopt.optimizer.gbrt.base_minimize
deephyper.skopt.optimizer.gbrt.cook_estimator
deephyper.skopt.optimizer.gbrt.gbrt_minimize
deephyper.skopt.optimizer.gp
deephyper.skopt.optimizer.gp.base_minimize
deephyper.skopt.optimizer.gp.cook_estimator
deephyper.skopt.optimizer.gp.gp_minimize
deephyper.skopt.optimizer.gp.normalize_dimensions
deephyper.skopt.optimizer.optimizer
deephyper.skopt.optimizer.optimizer.boltzmann_distribution
deephyper.skopt.optimizer.optimizer.check_x_in_space
deephyper.skopt.optimizer.optimizer.cook_estimator
deephyper.skopt.optimizer.optimizer.cook_initial_point_generator
deephyper.skopt.optimizer.optimizer.cook_objective_scaler
deephyper.skopt.optimizer.optimizer.create_result
deephyper.skopt.optimizer.optimizer.gaussian_acquisition_1D
deephyper.skopt.optimizer.optimizer.has_gradients
deephyper.skopt.optimizer.optimizer.is_2Dlistlike
deephyper.skopt.optimizer.optimizer.is_listlike
deephyper.skopt.optimizer.optimizer.log
deephyper.skopt.optimizer.optimizer.normalize_dimensions
deephyper.skopt.optimizer.optimizer.Categorical
deephyper.skopt.optimizer.optimizer.MoScalarFunction
deephyper.skopt.optimizer.optimizer.Optimizer
deephyper.skopt.optimizer.optimizer.Space
deephyper.skopt.optimizer.optimizer.ExhaustedFailures
deephyper.skopt.optimizer.optimizer.ExhaustedSearchSpace
deephyper.skopt.sampler
deephyper.skopt.sampler.Grid
deephyper.skopt.sampler.Halton
deephyper.skopt.sampler.Hammersly
deephyper.skopt.sampler.InitialPointGenerator
deephyper.skopt.sampler.Lhs
deephyper.skopt.sampler.Sobol
deephyper.skopt.sampler.base
deephyper.skopt.sampler.base.InitialPointGenerator
deephyper.skopt.sampler.grid
deephyper.skopt.sampler.grid.Grid
deephyper.skopt.sampler.grid.InitialPointGenerator
deephyper.skopt.sampler.grid.Space
deephyper.skopt.sampler.halton
deephyper.skopt.sampler.halton.Halton
deephyper.skopt.sampler.halton.InitialPointGenerator
deephyper.skopt.sampler.halton.Space
deephyper.skopt.sampler.hammersly
deephyper.skopt.sampler.hammersly.Halton
deephyper.skopt.sampler.hammersly.Hammersly
deephyper.skopt.sampler.hammersly.InitialPointGenerator
deephyper.skopt.sampler.hammersly.Space
deephyper.skopt.sampler.lhs
deephyper.skopt.sampler.lhs.InitialPointGenerator
deephyper.skopt.sampler.lhs.Lhs
deephyper.skopt.sampler.lhs.Space
deephyper.skopt.sampler.sobol
deephyper.skopt.sampler.sobol.InitialPointGenerator
deephyper.skopt.sampler.sobol.Sobol
deephyper.skopt.sampler.sobol.Space
deephyper.skopt.searchcv
deephyper.skopt.searchcv.check_callback
deephyper.skopt.searchcv.check_dimension
deephyper.skopt.searchcv.dimensions_aslist
deephyper.skopt.searchcv.eval_callbacks
deephyper.skopt.searchcv.point_asdict
deephyper.skopt.searchcv.rankdata
deephyper.skopt.searchcv.BayesSearchCV
deephyper.skopt.searchcv.Optimizer
deephyper.skopt.space
deephyper.skopt.space.check_dimension
deephyper.skopt.space.Categorical
deephyper.skopt.space.CategoricalEncoder
deephyper.skopt.space.Dimension
deephyper.skopt.space.Identity
deephyper.skopt.space.Integer
deephyper.skopt.space.LabelEncoder
deephyper.skopt.space.LogN
deephyper.skopt.space.Normalize
deephyper.skopt.space.Pipeline
deephyper.skopt.space.Real
deephyper.skopt.space.Space
deephyper.skopt.space.StringEncoder
deephyper.skopt.space.ToInteger
deephyper.skopt.space.gaussian_kde
deephyper.skopt.space.space
deephyper.skopt.space.space.check_dimension
deephyper.skopt.space.space.Categorical
deephyper.skopt.space.space.CategoricalEncoder
deephyper.skopt.space.space.Dimension
deephyper.skopt.space.space.Identity
deephyper.skopt.space.space.Integer
deephyper.skopt.space.space.LabelEncoder
deephyper.skopt.space.space.LogN
deephyper.skopt.space.space.Normalize
deephyper.skopt.space.space.Pipeline
deephyper.skopt.space.space.Real
deephyper.skopt.space.space.Space
deephyper.skopt.space.space.StringEncoder
deephyper.skopt.space.space.ToInteger
deephyper.skopt.space.space.gaussian_kde
deephyper.skopt.space.transformers
deephyper.skopt.space.transformers.CategoricalEncoder
deephyper.skopt.space.transformers.Identity
deephyper.skopt.space.transformers.LabelEncoder
deephyper.skopt.space.transformers.LogN
deephyper.skopt.space.transformers.Normalize
deephyper.skopt.space.transformers.Pipeline
deephyper.skopt.space.transformers.StringEncoder
deephyper.skopt.space.transformers.ToInteger
deephyper.skopt.space.transformers.Transformer
deephyper.skopt.utils
deephyper.skopt.utils.check_dimension_names
deephyper.skopt.utils.check_list_types
deephyper.skopt.utils.check_x_in_space
deephyper.skopt.utils.cook_estimator
deephyper.skopt.utils.cook_initial_point_generator
deephyper.skopt.utils.cook_objective_scaler
deephyper.skopt.utils.create_result
deephyper.skopt.utils.deepcopy
deephyper.skopt.utils.dimensions_aslist
deephyper.skopt.utils.dump
deephyper.skopt.utils.eval_callbacks
deephyper.skopt.utils.expected_minimum
deephyper.skopt.utils.expected_minimum_random_sampling
deephyper.skopt.utils.has_gradients
deephyper.skopt.utils.is_2Dlistlike
deephyper.skopt.utils.is_listlike
deephyper.skopt.utils.load
deephyper.skopt.utils.normalize_dimensions
deephyper.skopt.utils.point_asdict
deephyper.skopt.utils.point_aslist
deephyper.skopt.utils.use_named_args
deephyper.skopt.utils.wraps
deephyper.skopt.utils.Dimension
deephyper.skopt.utils.ExtraTreesRegressor
deephyper.skopt.utils.GradientBoostingQuantileRegressor
deephyper.skopt.utils.Grid
deephyper.skopt.utils.Halton
deephyper.skopt.utils.Hammersly
deephyper.skopt.utils.InitialPointGenerator
deephyper.skopt.utils.Lhs
deephyper.skopt.utils.OrderedDict
deephyper.skopt.utils.RandomForestRegressor
deephyper.skopt.utils.Sobol
deephyper.skopt.utils.Space
Stopper
deephyper.stopper.ConstantStopper
deephyper.stopper.IdleStopper
deephyper.stopper.LCModelStopper
deephyper.stopper.MedianStopper
deephyper.stopper.Stopper
deephyper.stopper.SuccessiveHalvingStopper
deephyper.stopper.integration
deephyper.stopper.integration.deepxde
deephyper.stopper.integration.deepxde.DeepXDEStopperCallback
deephyper.stopper.integration.tensorflow
deephyper.stopper.integration.tensorflow.TFKerasStopperCallback
Developer Guides
Development
Documentation
Tests
Build and Release
Software Architecture
Repository
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.rst
.pdf
deephyper.nas.metrics.r2
Contents
r2()
deephyper.nas.metrics.r2
#
deephyper.nas.metrics.
r2
(
y_true
,
y_pred
)
[source]
#
Contents
r2()
